CogStack

2021

Zakeri, Rosita et al. “Biological responses to COVID-19: Insights from physiological and blood biomarkers” Current Research in Translational Medicine (2021). https://doi.org/10.1016/j.retram.2021.103276

Carr, Ewan et al. “Evaluation and Improvement of the National Early Warning Score (NEWS2) for COVID-19: a multi-hospital study” BMC Medicine (2021). https://doi.org/10.1186/s12916-020-01893-3

Wu, Honghan et al. “Ensemble learning for poor prognosis predictions: A case study on SARS-CoV-2” JAMIA (2021). https://doi.org/10.1093/jamia/ocaa295

2020

Bean, Dan et al. “Treatment with ACE-inhibitors is associated with less severe disease with SARS-Covid-19 infection in a multi-site UK acute Hospital Trust.” medRxiv (2020) 20056788. https://doi.org/10.1101/2020.04.07.20056788 

Wang, Tao et al. “Implementation of a Real-Time Psychosis Risk Detection and Alerting System Based on Electronic Health Records using CogStack” Jove Journal (2020). https://dx.doi.org/10.3791/60794

Teo, James et al. “Real-time clinician text feeds from electronic health records” medRxiv (2020) 20205617. https://doi.org/10.1101/2020.10.02.20205617

Bendayan, Rebecca et al. “Identifying physical health comorbidities in a cohort of individuals with severe mental illness: An application of SemEHR” arXiv (2020) arXiv:2002.08901. https://arxiv.org/pdf/2002.08901.pdf

2019

Kraljevic, Zeljko, et al. “MedCAT–Medical Concept Annotation Tool.” arXiv preprint arXiv:1912.10166 (2019). https://arxiv.org/abs/1912.10166

Bean, Daniel M., et al. “Semantic computational analysis of anticoagulation use in atrial fibrillation from real world data.” PloS one 14.11 (2019). https://doi.org/10.1371/journal.pone.0225625

Tissot, Hegler, et al. “Natural Language Processing for Mimicking Clinical Trial Recruitment in Critical Care: A Semi-automated Simulation Based on the LeoPARDS Trial.” medRxiv (2019): 19005603. https://doi.org/10.1101/19005603

Searle, Thomas, et al. “MedCATTrainer: A Biomedical Free Text Annotation Interface with Active Learning and Research Use Case Specific Customisation.” arXiv preprint arXiv:1907.07322 (2019). https://arxiv.org/abs/1907.07322

2018

Jackson, Richard, et al. “CogStack-experiences of deploying integrated information retrieval and extraction services in a large National Health Service Foundation Trust hospital.” BMC medical informatics and decision making 18.1 (2018): 47. https://doi.org/10.1186/s12911-018-0623-9

Wu, Honghan, et al. “SemEHR: A general-purpose semantic search system to surface semantic data from clinical notes for tailored care, trial recruitment, and clinical research.” Journal of the American Medical Informatics Association 25.5 (2018): 530-537. https://doi.org/10.1093/jamia/ocx160

2017

Wu, Honghan, et al. “SemEHR: surfacing semantic data from clinical notes in electronic health records for tailored care, trial recruitment, and clinical research.” The Lancet 390 (2017): S97. https://doi.org/10.1016/S0140-6736(17)33032-5

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